The event brought together experts to celebrate the leadership of Prof. Martyn Smith in developing the "Key Characteristics of Human Carcinogens" and collaborate on future directions for the Key Characteristics approach.
https://www.eventbrite.com/e/from-free-radicals-to-key-characteristics-ticke…
The inTelligence And Machine lEarning (TAME) Toolkit for Introductory Data Science, Chemical-Biological Analyses, Predictive Modeling, and Database Mining for Environmental Health Research
https://tools.niehs.nih.gov/srp/1/eposted/pdfs/srp_e_posted_notes_2022_05_06_508.pdf
Dylan James Wallis, Jane La Du, Preethi Thunga, Daniel Elson, Lisa Truong, Siva Kumar Kolluri, Robyn Leigh Tanguay, David M Reif. Leveraging a High-Throughput Screening Method to Identify Mechanisms of Individual Susceptibility Differences in a Genetically Diverse Zebrafish Model. 29 April 2022. Fro…
Preethi presented a poster at the Society of Toxicology (SOT) annual meeting in San Diego:
"Using zebrafish behavior to reveal gene-environment interactions underlying population susceptibility differences after chemical exposure"
Preethi Thunga, Lisa Truong, Yvonne Rericha, Warren Anderson, …
Adrian Green presented a platform talk at the SOT session “Deep Learning and Graph Algorithms: New Approaches in Computational Toxicology”
Anne E Thessen, Skylar Marvel, J. C. Achenbach, Stephan Fischer, Melissa Anne Haendel, Kimberly Hayward, Nils Klüver, Sarah Könemann, Jessica Legradi, Pamela J Lein, Connor Leong, Arantza Muriana, J. Erik Mylroie, Stephanie Padilla, Dante Perone, Antonio Planchart, Rafael Miñana Prieto, Celia Queved…
Truong L, Rericha Y, Thunga P, Marvel S, Wallis D, Simonich MT, Field JA, Cao D, Reif DM, Tanguay RL. Systematic developmental toxicity assessment of a structurally diverse library of PFAS in zebrafish. J Hazard Mater. 2022 Mar 2;431:128615. doi: 10.1016/j.jhazmat.2022.128615. Epub ahead of print. P…
Kirkwood KI, Fleming J, Nguyen H, Reif DM, Baker ES, Belcher SM. Utilizing Pine Needles to Temporally and Spatially Profile Per- and Polyfluoroalkyl Substances (PFAS). Environ Sci Technol. 2022 Feb 17. doi: 10.1021/acs.est.1c06483. Epub ahead of print. PMID: 35175744.
https://pubmed.ncbi.nlm.nih.…
Hubal EAC, DeLuca NM, Mullikin A, Slover R, Little JC, Reif DM. Demonstrating a systems approach for integrating disparate data streams to inform decisions on children's environmental health. BMC Public Health. 2022 Feb 15;22(1):313. doi: 10.1186/s12889-022-12682-3. PMID: 35168583; PMCID: PMC8845296…
Professor Julia Rager led development of the the inTelligence And Machine lEarning (TAME) Toolkit for Introductory Data Science, Chemical-Biological Analyses, Predictive Modeling, and Database Mining for Environmental Health Research.
Adrian Green won the Elsevier Postdoctoral Award from the Computational Toxicology Special Section (CTSS) of the Society of Toxicology (SOT)!
Green AJ, Mohlenkamp MJ, Das J, Chaudhari M, Truong L, Tanguay RL, et al. (2021) Leveraging high-throughput screening data, deep neural networks, and conditional generative adversarial networks to advance predictive toxicology. PLoS Comput Biol 17(7): e1009135. https://doi.org/10.1371/journal.pcbi.1…
Adrian Green was elected as the 2021-22 postdoctoral representative to the Computational Toxicology Study Section of the Society of Toxicology (SOT).
Preethi Thunga won the Best Presentation award at the 2021 Genomic Sciences Symposium for her lightning talk (oral) presentation entitled: "High-throughput chemical hazard identification using behavioral assessments in zebrafish"
Top 10 SOT-CTSS Abstract Awards Winner (Top 5% of all posters): F. Akhtari, G. Small, T. Havener, K. Roell, A. Green, J. House, D. Reif, H.McLeod, T. Wiltshire, A. Motsinger-Reif. High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genome cell lines reveals an assoc…
Coffee & Viz: Visualization and Pattern Recognition in High-Dimensional Zebrafish Behavioral Studies using Deep Learning
David Reif presented as part of the UC Berkeley Superfund workshop on "The Problem of PFAS Contamination: How Can We Make Rapid Progress to Address it?"
David presented "Introduction to Grouping and Read-Across" with Gina Solomon (UCSF). He also chaired the session "Characterizing Toxicity – Usi…
Burnett SD, Blanchette AD, Grimm FA, House JS, Reif DM, Wright FA, Chiu WA, Rusyn I. Population-based toxicity screening in human induced pluripotent stem cell-derived cardiomyocytes. Toxicol Appl Pharmacol. 2019 Aug 16;381:114711. doi: 10.1016/j.taap.2019.114711. [Epub ahead of print] PubMed P…
